PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G186700.1
Common NameB456_008G186700, LOC105764572
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 346aa    MW: 38177.1 Da    PI: 6.1872
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G186700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14161207354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Gorai.008G186700.1 161 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 207
                         79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-12161207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-14162216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-14162214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-5171210No hitNo description
Gene3DG3DSA:3.30.70.2601.2E-4243300No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MCGKKDEDQG ECSQAIHNIQ GYQEQIYMQQ QHQQMQQQQH NIDLFGGTRG GLIFPEVSPI  60
LPWSLPPIHN FNPALFTGNP VRDDDPFLVP PPPTSYGGLF NRRAPSLQFA YDGTSADHLR  120
ILSDTLGPGV QPGSAPFGLQ AELGKMTAQE IMDAKALAAS KSHSEAERRR RERINNHLAK  180
LRSLLPSTTK TDKASLLAEV IQHVKELKRQ TSLIAETSPV PTEIDELTVD TSEEDGKFVI  240
KASLCCEDRS DLLPDLIKTL KALHLKTLKA EITTLGGRVK NVLFITGEED SSSSGEQQQQ  300
QLQYCISSIQ EALKAVMEKT SVDESSSGNV KRQRTNISIL EHRSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438654.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y11e-115BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0D2PX930.0A0A0D2PX93_G
STRINGPOPTR_0008s11490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70482843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.17e-89bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]